Invited Papers
- Yoichiro Nakatani, Hiroyuki Takeda, Yuji Kohara, and Shinichi Morishita. Reconstruction
of the Vertebrate Ancestral Genome Reveals Dynamic Genome Reorganization
in Early Vertebrates. Medaka: A model for organogenetics,
human disease, and evolution. Springer pp.307-322 (2011)
- Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, Yoichiro Nakatani, Shin-ichi Hashimoto, Masako Ogawa, Kouji
Matsushima, Sam Guoping Gu, Masahiro
Kasahara, Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka
Suzuki, Sumio Sugano, Yuji Kohara,
Hiroyuki Takeda, Andrew Fire(#), Shinichi Morishita(#). Chromatin-Associated Periodicity in
Genetic Variation Downstream of Transcriptional Start Sites. Medaka:
A model for organogenetics, human disease, and
evolution. Springer pp.39-48 (2011)
- Taro L. Saito, Jun Yoshimura, Budrul Ahsan, Atsushi Sasaki, Reginaldo
Kurosh, and Shinichi Morishita. UTGB
Toolkit for Personalized Genome Browsers. Tag-based Next
Generation Sequencing (Editted by Harbers and Kahl). pp435-448 Wiley (2011)
- Yoichiro Nakataniand Shinichi Morishita.
Vertebrate genome evolution examined by comparing the human and fish
genomes. (Review) Encyclopedia of Life Sciences, John Wiley
& Sons (2007)
- Tomoyuki
Yamada and Shinichi Morishita. Computing
Highly Specific and Noise Tolerant Oligomers Efficiently, Journal of
Bioinformatics and Computational Biology, Vol. 2, No. 1, pp21-46
(2004)
- Jun Ogasawaraand Shinichi Morishita. Fast and Sensitive Algorithm for Aligning
ESTs to Human Genome. Journal
of Bioinformatics and Computational Biology, Vol.1, No.2, 363-386,
2003.
- Jun Ogasawara and Shinichi Morishita.
Practical Software for Aligning ESTs to Human Genome. Proc. of the Thirteenth Annual Symposium on
Combinatorial Pattern Matching (CPM2002) Fukuoka, Japan, July
3-5, 2002.
- Jie Cheng,
Christos Hatzis, Hisashi
Hayashi, Mark-A. Krogel, Shinichi Morishita ,
David Page, and Jun Sese. KDD Cup 2001 Report. ACM SIGKDD Explorations,
Volume 3, Issue 2, Janurary 2002, 47-64. pdf ps
- Shinichi Morishita. On Classification
and Regression. Proc. of First Int'l Conf. on Discovery Science, Lecture
Notes in Artificial Intelligence, Springer, Vol. 1532, pages 40-57,
December 1998.
- Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, and Takeshi Tokuyama. Mining Optimized
Association Rules for Numeric Attributes. Journal of Computer and System
Sciences - Special issue on the 15th ACM SIGACT-SIGMOD-SIGART Symposium on
Principles of Database Systems, Academic Press. 58(1): 1-12, 1999.
- Shinichi Morishita. An Extension
of Van Gelder's Alternating Fixpoint
to Magic Programs. Journal of Computer and System Sciences - Special Issue
on the 12th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database
Systems, Academic Press, Volume 52, Number 3, pp. 506-521, June 1996
Invited Talks
- Shinichi Morishita. Searching
Massive Epigenome Data for Evolutionarily
Conserved Sequence Motifs. 1st IEEE International Conference on
Computational Advances in Bio and medical Sciences. Orland, Florida, USA.
Feb. 3, 2011.
- Shinichi Morishita. Genetic Variation
Associated with Nucleosome Structure and DNA Methylation. Fish Genome
Meeting 2011, Sanger Center, Cambridge, UK, March 11, 2011.
- Shinichi Morishita. Genetic Variation
Associated with Nucleosome Structure and DNA Methylation. The 3rd Congress
of BioSoft (BioSoft-2011), Beijing, China, March
23, 2011.
- Shinichi Morishita.
Chromatin-associated periodicity in genetic variation downstream of
transcriptional start sites. The 8th International
Workshop on Advanced Genomics. Tokyo, June 17, 2009
- Shinichi Morishita. Chromatin-associated
periodicity in genetic variation downstream of transcriptional start
sites. Third International Workshop on Fish Genomes, Sanger Center, Hinxton, UK, March 13, 2009.
- Shinichi Morishita. Vertebrate Genome
Evolution Examined by Comparing the Human and Fish Genomes. International Symposium
Celebrating Dr. David S. Hogness, Recipient of the 23rd International
Prize for Biology. Kyoto, Japan, Nov. 21, 2007
- Shinichi Morishita. The medaka draft
genome: new insights into vertebrate genome evolution
. Origin
of Vertebrates, Tokyo, Japan, March 28th, 2007
- Shinichi Morishita. Second International
Workshop on Fish Genomes, Sanger Center, Hinxton,
UK, March 19, 2007.
- Shinichi Morishita. Development of
Whole Genome Shotgun Assembler for Sequencing Medaka Genome. Medaka Genome
and Vertebrate Evolution. Tokyo, Japan, March 3-4, 2004. (Joint work with
Masahiro Kasahara, Shin Sasaki, Yukinobu Nagayasu, Tadasu Shin-i, and Yuji Kohara)
- Jun Ogasawara and Shinichi Morishita.
Practical Software for Aligning ESTs to Human Genome. Proc. of the Thirteenth Annual Symposium on
Combinatorial Pattern Matching (CPM2002) Fukuoka, Japan, July
3-5, 2002.
- Shinichi Morishita. Gene
Resource Locator Project. The 4th
International Workshop on Advanced Genomics, Kyoto, Japan, Nov. 13-14,
2001. (Joint work with Jun Ogasawara, Toshihiko Honkura,
and Tomoyuki Yamada)
- Shinichi Morishita. Enumerating
Alternative Spliced Transcripts for Understanding Complexity of the Human
Genome. Machine
Intelligence 18 Workshop, King's Manor, University of York, 19-21
September 2001. (Joint work with Jun Ogasawara, Toshihiko Honkura, and Tomoyuki
Yamada)
- Shinichi Morishita. Bridging a
gap between DNA sequences & expression patterns of genes. International Symposium on
Bioinformatics, Pohang University of Science and Technology, Pohang,
Korea, Nov. 22-23, 2000. (Joint work with Jun Ogasawara)
- Shinichi Morishita. Association
Rules, Boosting, and Genome Mining. DIMACS/IBM Workshop
on Data Mining in the Internet Age, IBM - Almaden,
San Jose, California, May 1 - 2, 2000. (Joint work with Jun Sese)
- Shinichi Morishita. On
Classification and Regression. Proc. of First Int'l Conf. on Discovery
Science, Lecture Notes in Artificial Intelligence, Springer, Vol. 1532,
pages 40-57, December 1998.
List of Domestic Journal Papers
- Shinichi Morishita, Masayuki Numao, and Yoshio Tozawa. A
Scheduling Expert for Steel-Making Process by Cooperative Scheduling. (In
Japanese) Journal of Japan Society for Artificial Intelligence, Volume 5,
Number 2, pages 184-193, March 1990
- Shinichi Morishita. Theory of
Lattice-Valued Programs (In Japanese) Computer Software, Japan Society for
Software Science and Technology, pages 66-82, October 1989
- Shinichi Morishitaand Masayuki Numao. Visual Compuation
Model for Prolog (in Japanese) Transactions of IPSJ, Volumn
28, Number 4, pages 359-366, April 1987