People

 

Professor Shinichi Morishita
Project lecturer Wei Qu
Project research associate Jun Yoshimura
Research associate Kazuki Ichikawa
Technical assistant Natsuko Maruyama
Tsurutsuki Sugai
Yoshiko Iijima
Ph.D candidate Yuta Suzuki (D3)
Yuichi Motai (D2)
Yoshihiko Suzuki (D1)
Master course student Yusuke Takahashi (M2)
Bachelor Student Toshiaki Uno (B4)
Bansyo Masutani  (B4)
Programming assistant Tipireddy Shubhakar Reddy


Lab Alumni

[2015] Yuichi Motai (master)
Yusuke Takahashi, Yosuke Tanigawa (bachelor)
[2014] Yuta Suzuki (master)
Yoshihiko Suzuki, Shingo Tomioka (bachelor)
[2013] Kazuki Ichikawa, Shoichiro Oishi, Hayato Sakata (master)
Yotaro Katayama, Yuichi Motai (bachelor)
[2012] Yuta Suzuki, Satoshi Hiraoka (bachelor)
[2011] Kazuki Ichikawa, Shoichiro Oishi, Hayato Sakata, Tetsuya Negoro (bachelor)
[2010] Xuan Liu, Masaki Munenaga (master)
[2009] Atsushi Sasaki, Akio Hirota, Tetsuro Miyawaki, Xin Li (master)
[2008] Reginaldo Kuroshu, Takashi Shigeta (master)
[2006] Wei Qu (master)
[2005] Shin Sasaki, Yuninobu Nagayasu, Eri Nakamura, Budrul Ahsan (master)
[2004] Masahiro Kasahara, Miwaka Ohtani, Taro Saito (master)
[2003] Jun Ogasawara, Junji Hashimoto, Tomoyuki Yamada (master)
Shin Sasaki, Eri Nakamura (bachelor)
[2002] Norikazu Monma (master)
Masahiro Kasahara, Miwaka Ohtani, Taro Saito, Hiroshi Sawai (bachelor)
[2001] Jun Sese (master)
Jun Ogasawara, Hisashi Hayashi (bachelor)

List of Doctral Theses

  • [2011] Reginaldo Kuroshu. Computational approaches for high-throughput sequencing and assembly of clone sequences.
    • Kuroshu RM, Watanabe J, Sugano S, Morishita S, Suzuki Y, Kasahara M. Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly. PLoS One.  7;5(5):e10517 (2010)
  • [2011] Hiroshi Hatsuda. Marked Point Process to Analyze Biological Data.
    • Hiroshi Hatsuda, Keigo Muramatsu, Toshiro Aigaki, and Shinichi Morishita. Robust and Accurate Recognition of Veins in Fruit Fly Wings.IEEE 6th International Symposium on Image and Signal Processing and Analysis.pp. 146-151(2009)
  • [2011] Hongyan Wu. Accelerating Path-free XML Queries in RDBMS.
    • Hongyan Wu, Taro L Saito, Shinichi Morishita. Accelerating Path-free XML Queries in RDBMS. IPSJ Online Transactions. Vol. 3, pp.206-217 (2010)
  • [2009] Masahiro Kasahara. RAMEN: Genome Assembler.
    • Masahiro Kasahara(*), Kiyoshi Naruse(*), Shin Sasaki(*), Yoichiro Nakatani(*), Wei Qu, Budrul Ahsan, Tomoyuki Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai, Tomoko Jindo, Daisuke Kobayashi, Atsuko Shimada, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda(#), Shinichi Morishita(#), and Yuji Kohara(#).The medaka draft genome and insights into vertebrate genome evolution. Nature 447, 714-719 (2007)* joint first authors. # joint corresponding authors. doi:10.1038/nature05846
  • [2009] Wei Qu. Efficient frequency-based de novo short read clustering for error trimming in next-generation sequencing.
  • [2008] Shin Sasaki. Medaka genome sequencing and synchronization between genome evolution and nucleosome structure in medaka genome.
  • [2008] Tomoyuki Yamada. Research on searching for unique and repetitive regions from large-scale biological sequence information.
  • [2007] Taro Saito. Purifying XML Structures.
    • Taro L. Saito and Shinichi Morishita. Relational-Style XML Query. Proceedings of the 2008 ACM SIGMOD International Conference on Management of Data (ACM SIGMOD), Vancouver, 303-314 (2008)
  • [2007] Yoichiro Nakatani. Whole genome duplication and reconstruction of ancestor genomes.
  • [2005] Jun Sese. Classified Clustering for Quantitative Biological Data Analysis.
  • [2000] Akihiro Nakaya. Parallel data mining for analysis of correlated genetic factors.
    • Akihiro Nakaya, Harutsugu Hishigaki and Shinichi Morishita. Mining the Quantitative Trait Loci Associated with Oral Glucose Tolerance in the Oletf Rat. Proc. of Pacific Symposium on Biocomputing, pages 367-379, January 4-9, 2000.
    • Akihiro Nakaya, Hideharu Furukawa and Shinichi Morishita. Weighted Majority Decision among Several Region Rules for Scientific Discovery. Proc. of Second Int’l Conf. on Discovery Science, Lecture Notes in Artificial Intelligence, Springer, pages 15-29, December 1999.