List
of Refereed, International Journal/Conference Papers (Blue-colored
authors indicate members or ex-members in Morishita Group.)
l Ogoshi K,
Hashimoto S, Nakatani Y, Qu W, Oshima K, Tokunaga K, Sugano S, Hattori M,
Morishita S, Matsushima K. Genome-wide profiling of DNA methylation in human
cancer cells. Genomics. 98(4):280-7 (2011)
l Funakoshi
M, Tsuda M, Muramatsu K, Hatsuda H, Morishita S, Aigaki T. A gain-of-function
screen identifies wdb and lkb1 as lifespan-extending genes in Drosophila.
Biochem Biophys Res Commun.405(4):667-72 (2011)
l Hongyan
Wu, Taro L Saito, Shinichi Morishita. Accelerating Path-free XML Queries in
RDBMS. IPSJ Online Transactions. Vol. 3, pp.206-217 (2010)
l Kuroshu
RM, Watanabe J, Sugano S, Morishita S, Suzuki Y, Kasahara M. Cost-effective
sequencing of full-length cDNA clones powered by a de novo-reference hybrid
assembly. PLoS One. 7;5(5):e10517
(2010)
l Naito Y,
Yoshimura J, Morishita S, Ui-Tei K. siDirect 2.0:
updated software for designing functional siRNA with reduced seed-dependent
off-target effect. BMC Bioinformatics. 10:392 (2009)
l Watanabe
M, Watanabe D, Nogami S, Morishita S, Ohya Y. Comprehensive and quantitative
analysis of yeast deletion mutants defective in apical and isotropic bud
growth. Curr Genet. 55(4):365-80. (2009)
l Hiroshi Hatsuda, Shinichi Morishita, Keigo Muramatsu,
and Toshiro Aigaki.
Robust and Accurate Recognition of Veins in Fruit Fly Wings.
IEEE 6th International Symposium on Image
and Signal Processing and Analysis.
Satzburg, Austria. Sept, 2009. (in press)
l Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi
Sasaki, Reginaldo Kuroshu and Shinichi Morishita.
UTGB Toolkit for Personalized Genome Browsers.
Bioinformatics (in press) advance
online version (June 2009)
http://utgenome.org/
l Wei Qu, Shin-ichi Hashimoto, Shinichi
Morishita.
Efficient
frequency-based de novo short read
clustering for error trimming in next-generation sequencing.
Genome Research 19(7):
1309-1315 (2009)
l Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, Yoichiro Nakatani, Shin-ichi Hashimoto, Masako Ogawa,
Kouji Matsushima, Sam Guoping Gu, Masahiro Kasahara,
Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka Suzuki, Sumio Sugano,
Yuji Kohara, Hiroyuki Takeda, Andrew Fire(#), Shinichi
Morishita(#).
Chromatin-Associated
Periodicity in Genetic Variation Downstream of Transcriptional Start Sites.
Science 323(5912):401-4 (2009)
# joint corresponding authors.
To obtain a PDF copy from the official page of Science, click here.
l Shin-ichi
Hashimoto(*), Wei Qu(*), Budrul Ahsan, Katsumi Ogoshi, Atsushi Sasaki, Yoichiro
Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano,
Clarence C Lee, Robert C Nutter, Shinichi Morishita,
Kouji Matsushima.
High-resolution
analysis of the 5'-end transcriptome using a next generation DNA sequencer.
PLoS One 4(1):e4108. Epub (2009)
* joint first authors.
l Budrul Ahsan, Taro L. Saito, Shin-ichi
Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi
Sasaki, Kouji Matsushima, Toshiro Aigaki, and Shinichi
Morishita.
MachiBase:
a Drosophila melanogaster 5'-end mRNA transcription database.
Nucleic Acids Research, Vol. 37,
Database issue D49-D53 (2009)
l The
International Silkworm Genome Consortium.
The
genome of a lepidopteran model insect, the silkworm Bombyx mori.
Insect Biochemistry and Molecular Biology,
Vol. 38, Issue 12, 1036-1045 (2008)
l Taku Miyagawa, Minae Kawashima, Nao Nishida, Jun Ohashi, Ryosuke Kimura,
Akihiro Fujimoto, Mihoko Shimada, Shinichi Morishita,
Takashi Shigeta, Ling Lin, Seung-Chul Hong, Juliette Faraco, Yoon-Kyung
Shin, Jong-Hyun Jeong, Yuji Okazaki, Shoji Tsuji, Makoto Honda, Yutaka Honda,
Emmanuel Mignot, & Katsushi Tokunaga.
Variant
between CPT1B and CHKB associated with susceptibility to narcolepsy.
Nature Genetics, 40(11):1324-8,
(2008)
l Taro L. Saito and Shinichi Morishita.
Relational-Style
XML Query.
Proceedings of the 2008 ACM SIGMOD
International Conference on Management of Data (ACM SIGMOD), Vancouver,
303-314 (2008)
l Keiko
Kono, Satoru Nogami, Mitsuhiro Abe, Masafumi Nishizawa, Shinichi Morishita, David Pellman, and Yoshikazu Ohya.
G1/S
cyclin-dependent kinase regulates small GTPase Rho1p through phosphorylation of
RhoGEF Tus1p in Saccharomyces cerevisiae.
Mol Biol Cell. 19(4):1763-71
(2008)
l Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro
Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro
Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi
Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi
Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji
Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi,
Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita,
Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, and Shinichi Morishita .
UTGB/medaka:
genomic resource database for medaka biology.
Nucleic Acids Research, Vol. 36, Database issue D747-D752, (2008)
l Yoichiro Nakatani, Hiroyuki Takeda, Yuji Kohara,
and Shinichi Morishita.
Reconstruction
of the Vertebrate Ancestral Genome Reveals Dynamic Genome Reorganization in
Early Vertebrates.
Genome Research 17(9): 1254-1265 (2007)
advance online version
(open access)
supplementary
information
l Masahiro Kasahara(*), Kiyoshi Naruse(*), Shin Sasaki(*), Yoichiro
Nakatani(*), Wei Qu, Budrul Ahsan, Tomoyuki
Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai, Tomoko Jindo,
Daisuke Kobayashi, Atsuko Shimada, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama,
Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi
Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru
Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo
Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki
Takeda(#), Shinichi Morishita(#), and Yuji
Kohara(#).
The
medaka draft genome and insights into vertebrate genome evolution.
Nature 447, 714-719 (2007)
* joint first authors. # joint corresponding authors.
doi:10.1038/nature05846
Supplementary
Information
l Taro L. Saito and Shinichi Morishita.
Efficient Integration of Structure Indexes of XML.
Proceedings of the 12th International
Conference on Database Systems for Advanced Applications (DASFAA), April
2007, Bangkok, 2007.
l Ohnuki S,
Nogami S, Kanai H, Hirata D, Nakatani Y, Morishita S,
Ohya Y.
Diversity of Ca2+-induced morphology revealed by morphological phenotyping of
Ca2+-sensitive mutants of Saccharomyces cerevisiae.
Eukaryot Cell. 6(5): 817-30
(2007)
l Kikuchi
Y, Mizuuchi E, Nogami S, Morishita S, Ohya Y.
Involvement of Rho-type GTPase in control of cell size in Saccharomyces
cerevisiae.
FEMS Yeast Res. 7(4):569-78
(2007)
l Masahiro Kasahara and Shinichi Morishita.
Large-scale genome
sequence processing.
Imperial College Press, 248pp. 2006
l Miura F,
Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, and Ito T.
A large-scale
full-length cDNA analysis to explore the budding yeast transcriptome.
Proc
Natl Acad Sci U S A. 103(47):17846-51, 2006
Web Site: UT Genome Browser (Yeast)
l Taro L. Saito and Shinichi Morishita.
Amoeba
Join: Overcoming Structural Fluctuations of XML Data.
Ninth International Workshop on the Web
and Databases (WebDB), 2006.
l Tomoyuki Yamada, Haruhiko Souma, Shinichi Morishita.
PrimerStation: a highly specific multiplex genomic PCR primer
design server for the human genome.
Nucl. Acids Res. 34: W665-W669, 2006.
doi:10.1093/nar/gkl297
Web Site:
http://ps.cb.k.u-tokyo.ac.jp/
l
Comparative
analysis of chimpanzee and human Y chromosomes unveils complex evolutionary
pathway.
Nature Genetics 38, 158 -
167, 2006.
l Suzuki G, Sawai H, Ohtani M, Nogami S, Sano-Kumagai F, Saka A, Yukawa M, Saito TL, Sese J, Hirata D, Morishita S, and Ohya Y.
Evaluation
of image processing programs for accurate measurement of budding and fission
yeast morphology.
Curr Genet. 1-11, 2006.
l Yoshikazu
Ohya, Jun Sese(*), Masashi Yukawa(*), Fumi
Sano, Yoichiro Nakatani, Taro L. Saito, Ayaka
Saka, Tomoyuki Fukuda, Satoru Ishihara, Satomi Oka, Genjiro Suzuki, Machika
Watanabe, Aiko Hirata, Miwaka Ohtani, Hiroshi Sawai,
Nicolas Fraysse, Jean-Paul Latge, Jean M. Francois, Markus Aebi, Seiji Tanaka,
Sachiko Muramatsu, Hiroyuki Araki, Kintake Sonoike, Satoru Nogami, and Shinichi Morishita.
High-dimensional
and large-scale phenotyping of yeast mutants
Proc
Natl Acad Sci U S A. 102(52):19015-20, 2005.
* equally contributed authors
l Taro L. Saito (*), Jun Sese (*), Yoichiro Nakatani, Fumi
Sano, Masashi Yukawa, Yoshikazu Ohya, and Shinichi
Morishita
Data Mining Tools for the Saccharomyces cerevisiae Morphological
Database.
Nucleic Acids Research 2005 33(Web Server issue):W589-W591
* indicates the joint first authors.
Web Site:
http://yeast.gi.k.u-tokyo.ac.jp/
l Yuki
Naito (*), Tomoyuki Yamada (*), Takahiro Matsumiya,
Kumiko Ui-Tei, Kaoru Saigo, and Shinichi Morishita
dsCheck:
highly sensitive off-target search software for dsRNA-mediated RNA interference.
Nucleic Acids Research 2005 33(Web Server issue):W753-W757
* indicates the joint first authors.
Web Site: http://dsCheck.RNAi.jp/
l Tomoyuki Yamada and Shinichi Morishita. Accelerated off-target search algorithm for siRNA. Bioinformatics,
21(8):1316-1324, 2005
l Yasuhiko Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji
Matsushima, and Shinichi Morishita.
5'SAGE: 5'-end Serial Analysis of Gene Expression database.
Nucl. Acids Res. Database Issue 33: D550-D552, 2005.
Web Site:
http://5sage.gi.k.u-tokyo.ac.jp/
l Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato and Shinichi Morishita.
Constrained Clusters of Gene Expression Profiles with
Pathological Features,
Bioinformatics, 20: 3137 - 3145, 2004.
l Jun Sese and Shinichi Morishita. Itemset Classified Clustering.
Proc. of the 8th European Conference on Principles and Practice of Knowledge
Discovery in Databases (PKDD), Lecture Notes in Computer Science,
Vol. 3202, 398-409, 2004.
l Shin-ichi
Hashimoto, Yutaka Suzuki, Yasuhiro Kasai, Kei
Morohoshi, Tomoyuki Yamada, Jun Sese, Shinichi
Morishita, Sumio Sugano, Kouji Matsushima. 5'-end SAGE for the analysis of transcriptional start sites.
Nature Biotechnology 22, 1146
- 1149, 2004.
Web Site:
http://5sage.gi.k.u-tokyo.ac.jp/
l Masaya Suzuki, Ryoji Igarashi, Mizuho Sekiya, Takahiko Utsugi, Shinichi Morishita, Masashi Yukawa, Yoshikazu Ohya.
Dynactin is involved in a checkpoint to monitor cell wall
synthesis in Saccharomyces cerevisiae.
Nature Cell Biology 6, 861 - 871, 2004.
l Yuki Naito(*), Tomoyuki Yamada(*),
Kumiko Ui-Tei, Shinichi Morishita, and Kaoru
Saigo.
siDirect: highly effective, target-specific siRNA design software
for mammalian RNA interference.
Nucl. Acids Res. 2004 32: W124-129. * indicates the joint first authors.
Web Site: http://design.rnai.jp/
l Tomoyuki Yamada and Shinichi Morishita. Computing
Highly Specific and Noise Tolerant Oligomers Efficiently,
Journal
of Bioinformatics and Computational Biology, Vol. 2, No. 1, pp21-46, 2004.
(Preliminary conference version)
Tomoyuki Yamada and Shinichi Morishita.
Computing Highly Specific and Mismatch Tolerant Oligomers
Efficiently,
Proc. of Second IEEE Computer Society Bioinformatics Conference (CSB2003),
Stanford University, Palo Alto, CA August 11-14, 316-325, 2003.
l Kazuei
Mita, Masahiro Kasahara, Shin Sasaki, Yukinobu
Nagayasu, Tomoyuki Yamada, Hiroyuki Kanamori, Nobukazu Namiki, Masanari
Kitagawa, Hidetoshi Yamashita, Yuji Yasukochi, Keiko Kadono-Okuda, KimikoYamamoto,
Masahiro Ajimura, Gopalapillai Ravikumar, Michihiko Shimomura,Yoshiaki
Nagamura, Tadasu Shin-i, Hiroaki Abe, Toru Shimada, Shinichi
Morishita, and Takuji Sasaki.
The
Genome Sequence of Silkworm, Bombyx mori.
DNA RESEARCH Vol.11, No.1, pp.27-35, 2004.
l Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka
Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, and Shinichi Morishita. SCMD: Saccharomyces Cerevisiae Morphological Database.
Nucl. Acids. Res. 32: D319-D322, 2004.
Web Site: http://yeast.gi.k.u-tokyo.ac.jp/
l Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya,
and Shinichi Morishita.
Development of Image Processing Program for Yeast Cell Morphology,
Journal of Bioinformatics and Computational Biology Vol. 1, No. 4
695-709, 2004.
l Shinichi Morishita and Asao Fujiyama.
Body
Expression Map of the Human Genome,
Encyclopedia of Molecular Cell Biology and Molecular Medicine,
2nd Edition, Wiley-Vch, 75-85, Nov 2003.
l Jun Ogasawara and Shinichi Morishita.
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome.
Journal of Bioinformatics and Computational Biology, Vol.1, No.2,
363-386, 2003.
(Preliminary conference version)
Jun Ogasawara and Shinichi Morishita.
Fast and Sensitive Algorithm for Aligning ESTs to
Human Genome.
Proc. of First
IEEE Computer Society Bioinformatics Conference (CSB2002), Stanford
University, Palo Alto, CA August 14 - 16, 43-53, 2002.
l Hashimoto
S, Nagai S, Sese J, Suzuki T, Obata A, Sato T,
Toyoda N, Dong HY, Kurachi M, Nagahata T, Shizuno K, Morishita
S, Matsushima K.
Gene expression profile in human leukocytes.
Blood. 2003 May 1;101(9):3509-13. Epub 2003.
l Jun Sese and Shinichi Morishita.
Answering the Most Correlated N
Association Rules Efficiently.
Proc. of 6th European Conference on Principles and Practice of Knowledge
Discovery in Databases (PKDD'02), Helsinki, Finland, August 19-23, 410-422,
2002.
l Jie
Cheng, Christos Hatzis, Hisashi Hayashi,
Mark-A. Krogel, Shinichi Morishita , David Page, and Jun Sese.
KDD Cup 2001 Report.
ACM SIGKDD Explorations,
Volume 3, Issue 2, Janurary 2002, 47-64.
l Shinichi Morishita.
Computing Optimal Hypotheses
Efficiently for Boosting.
Progress in Discovery Science, 2002,
Springer, 471-481.
l Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada and Shinichi
Morishita.
The Gene
Resource Locator: gene locus maps for transcriptome analysis.
Nucleic Acids Research, 2002, Vol. 30, No. 1 221-225.
l Suzuki Y,
Taira H, Tsunoda T, Mizushima-Sugano J, Sese J,
Hata H, Ota T, Isogai T, Tanaka T, Morishita S,
Okubo K, Sakaki Y, Nakamura Y, Suyama A, Sugano S.
Diverse transcriptional initiation revealed by fine, large-scale mapping of
mRNA start sites.
EMBO Rep. 2(5):388-93, May 2001.
l Suzuki Y,
Tsunoda T, Sese J, Taira H, Mizushima-Sugano J,
Hata H, Ota T, Isogai T, Tanaka T, Nakamura Y, Suyama A, Sakaki Y, Morishita S, Okubo K, Sugano S.
Identification and characterization of the potential promoter regions of 1031
kinds of human genes.
Genome Res. 11(5):677-84, May 2001.
l Yasuhiko
Morimoto, Hiromu Ishii, and Shinichi Morishita.
Efficient Construction of Regression Trees with Range and Region Splitting.
Machine Learning, Kluwer Academic, 45, pages, 235-259, 2001.
(Preliminary conference version)
Yasuhiko Morimoto, Hiromu Ishii, and Shinichi
Morishita.
Efficient Construction of Regression Trees with Range and Region Splitting.
Proceedings of VLDB '97, pages 166-175, Athens, Greece, August 1997
Abstract
PS files PDF file
l Takeshi
Fukuda, Yasuhiko Morimoto, Shinichi Morishita
and Takeshi Tokuyama.
Data Mining with Optimized Two-Dimensional Association Rules.
ACM Transactions on Database Systems (TODS), Volume 26
, Issue 2, pp. 179 - 213, June 2001.
(Preliminary conference version)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Data Mining Using Two-Dimensional Optimized Association Rules: Scheme,
Algorithms, and Visualization.
Proceedings of the 1996 ACM SIGMOD International Conference on Management of
Data (SIGMOD '96), pp. 13-23, Montreal, Canada, June 1996
PS file PDF file
l Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, and Kousaku Okubo.
BodyMap
incorporated PCR-based expression profiling data and a gene ranking system
Nucleic Acids Res. 2001 29: 156-158.
l Shinichi Morishita and Jun Sese.
Traversing Itemset Lattices with Statistical Metric Pruning.
Proc. of ACM SIGACT-SIGMOD-SIGART Symp. on Database
Systems (PODS). pp.226-236, May 2000. gzipped PS
gzipped
PDF file
l Shinichi Morishita, and Akihiro Nakaya.
Expressive Tests for Classification and Regression.
Transaction of IEICE, Vol.E83-D, No.1, pp.52-60, January 2000. PDF file
(Preliminary conference version)
Shinichi Morishita.
On Classification and Regression.
Proc. of First Int'l Conf. on Discovery Science, Lecture Notes in Artificial
Intelligence, Springer, Vol. 1532, pages 40-57, December 1998.
l Akihiro Nakaya, Harutsugu Hishigaki and Shinichi Morishita.
Mining the Quantitative Trait Loci Associated with Oral Glucose Tolerance in
the Oletf Rat.
Proc. of Pacific Symposium on Biocomputing, pages 367-379, January 4-9,
2000. gzipped
PS gzipped
PDF file
l Teruyoshi
Hishiki, Shoko Kawamoto, Shinichi Morishita,
Kousaku Okubo.
BodyMap: a human and mouse gene expression database.
Nucleic Acids Research, Volume 28, Issue 1, pp. 136-138, January 2000. PDF file
l Akihiro Nakaya, Hideharu Furukawa and Shinichi Morishita.
Weighted Majority Decision among Several Region Rules for Scientific Discovery.
Proc. of Second Int'l Conf. on Discovery Science, Lecture Notes in
Artificial Intelligence, Springer, pages 15-29, December 1999. gzipped PDF file
l Akihiro Nakaya, Harutsugu Hishigaki and Shinichi Morishita.
Tracing Synergetic Behavior of the QTLs Affecting Oral Glucose Tolerance in the
OLETF Rat.
Genome Informatics, December 14-15, 1999. gzipped PDF
file
l Shinichi Morishita, and Akihiro Nakaya.
Parallel branch-and-bound graph search for correlated association rules.
Proceedings of ACM SIGKDD Workshop on Large-Scale Parallel KDD Systems,
San Diego, August 1999. (Revised version: Lecture Notes in Artificial
Intelligence, Springer, Vol.1759, pages 127-144, 2000.) PDF file
l Shinichi Morishita, Teruyoshi Hishiki and Kousaku Okubo.
Towards Mining Gene Expression Database.
Proceedings of 1999 ACM SIGMOD Workshop on Research Issues in Data Mining
and Knowledge Discovery (DMKD), pages 21-25, June 1999
l Takeshi
Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Mining Optimized Association Rules for Numeric Attributes.
Journal of Computer and System Sciences - Special issue on the 15th ACM
SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, Academic
Press. 58(1): 1-12, 1999.
(Preliminary conference version)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Mining Optimized Association Rules for Numeric Attributes.
Proceedings of the 15th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of
Database Systems (PODS '96), pp. 182-191, Montreal, Canada, June 1996
Abstract PDF file
l Yasuhiko
Morimoto, Takeshi Fukuda, Shinichi Morishita,
and Takeshi Tokuyama.
Implementation and Evaluation of Decision Trees with Range and Region
Splitting.
Constraints, An International Journal, Kluwer Academic Press, Volumn 2,
pp. 401-427, 1997
(Preliminary conference version)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Constructing Efficient Decision Trees by Using Optimized Numeric Association
Rules.
Proceedings of VLDB '96, pages 146-155, Bombay, India, September 1996
l Kazukuni
Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi
Morishita, and Takeshi Tokuyama.
Computing Optimized Rectilinear Regions for Association Rules.
Proceedings of the Third Conference on Knowledge Discovery and Data Mining
(KDD'97), pages 96-103, Los Angels, August 1997
PS file PDF file
l Shinichi Morishita.
Avoiding Cartesian Products for Multiple Joins.
Journal of the ACM, Volume 44, Number 1, pp. 57-85, January 1997
Abstract
PDF file Abstract in Japanese
(Preliminary conference version)
Shinichi Morishita.
Avoiding Cartesian Products in Programs for Multiple Joins.
Proceedings of the 11th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of
Database Systems (PODS'92), pages 368-379, San Diego, California, June 1992
PDF file
l Takeshi
Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Interval Finding and Its Application to Data Mining.
Proceedings of ISSAC96 (International Symposium on Algorithms And Computation),
Lecture Notes in Computer Science, Volumn 1178, Springer-Verlag, pages
55-64, December 1996
l Shinichi Morishita.
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs.
Journal of Computer and System Sciences - Special Issue on the 12th ACM
SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, Academic
Press, Volume 52, Number 3, pp. 506-521, June 1996
Abstract
Abstract in
Japanese
(Preliminary conference version)
Shinichi Morishita.
An Alternating Fixpoint Tailored to Magic Programs'.
Proceedings of the 12th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database
Systems (PODS'93), pages 123-134, Washington DC, May 1993
l Takeshi
Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
SONAR: System for Optimized Numeric Association Rules.
Proceedings of the 1996 ACM SIGMOD International Conference on Management of
Data (SIGMOD '96), pp. 553, Montreal, Canada, June 1996
l Marcia A.
Derr, Shinichi Morishita, and Geoffrey Phipps.
The Glue-Nail Deductive Database Systems: Design, Implementation, and
Evaluation'.
The VLDB Journal, VLDB Endowment, Volume 3, Number 2, pages 123-160, April 1994
Abstract
Abstract in
Japanese
(Preliminary conference version)
Marcia A. Derr, Shinichi Morishita, and
Geoffrey Phipps.
Design and Implementation of the Glue-Nail Database System'.
Proceedings of the 1993 ACM SIGMOD International Conference on Management of
Data (SIGMOD'93), pp. 147-156, Washington DC, May 1993
PDF file
l Masayuki
Numao and Shinichi Morishita.
Cooperative Scheduling and Its Application to Steelmaking Processes.
IEEE Transactions on Industrial Electronics, Volume 38, Number 2, pages
150-155, April 1991
(Preliminary conference version)
Masayuki Numao and Shinichi Morishita
A Scheduling Environment for the Steel-Making Process.
Proceedings of the 5th IEEE Conference on Artificial Intelligence for
Applications, pages 279-286, Miami, Florida, March 1989
l Masayuki
Numao, Shinichi Morishita, and Hiroshi
Maruyama.
How Should Prolog Computation Be Represented for Practical Use
?
New Generation Computing, Springer-Verlag, Volume 8, Number 2, pages
95-112, October 1990
(Preliminary conference version)
Shinichi Morishita and Masayuki Numao.
Prolog Computation Model BPM and its debugger PROEDIT2.
Lecture Notes in Computer Science, Volumn 264, Springer-Verlag, pages
147-158, August 1987
l Shinichi Morishita.
A unified Approach to Semantics of Multi-Valued Logic Programs and an
Implementation of Boolean-Valued Case.
PhD Dissertation, the University of Tokyo, February 1990
l Kouichi
Fukunaga and Shinichi Morishita.
Lattice Programming Methodology.
Lecture Notes in Computer Science, Volumn 383, Springer-Verlag, pages
96-107, April 1988
l Shinichi Morishita, Masayuki Numao, and Shinichi Hirose.
Symbolical Construction of Truth Value Domain for Logic Program.
Proceedings of the 4th International Conference on Logic Programming,
MIT Press, pages 533-555, Melbourne, Australia, May 1987
List
of Domestic Journal Papers
l Shinichi Morishita, Masayuki Numao, and Yoshio Tozawa.
A Scheduling Expert for Steel-Making Process by Cooperative Scheduling. (In
Japanese)
Journal of Japan Society for Artificial Intelligence, Volume 5, Number 2, pages
184-193, March 1990
l Shinichi Morishita.
Theory of Lattice-Valued Programs (In Japanese)
Computer Software, Japan Society for Software Science and Technology, pages
66-82, October 1989
l Shinichi Morishita and Masayuki Numao.
Visual Compuation Model for Prolog (in Japanese)
Transactions of IPSJ, Volumn 28, Number 4, pages 359-366, April 1987
Invited
Papers
l Yoichiro Nakatani and Shinichi
Morishita.
Vertebrate genome evolution examined by comparing the human and
fish genomes.
(Review) Encyclopedia of Life Sciences, John Wiley & Sons (2007)
l Tomoyuki
Yamada and Shinichi Morishita.
Computing
Highly Specific and Noise Tolerant Oligomers Efficiently,
Journal of Bioinformatics
and Computational Biology, Vol. 2, No. 1, pp21-46 (2004)
l Jun
Ogasawara and Shinichi Morishita.
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome.
Journal of Bioinformatics and Computational Biology, Vol.1, No.2, 363-386,
2003.
l Jun
Ogasawara and Shinichi Morishita.
Practical Software for Aligning ESTs to Human Genome.
Proc. of the Thirteenth Annual
Symposium on Combinatorial Pattern Matching (CPM2002) Fukuoka, Japan, July
3-5, 2002.
l Jie
Cheng, Christos Hatzis, Hisashi Hayashi, Mark-A. Krogel, Shinichi Morishita
, David Page, and Jun Sese.
KDD Cup 2001 Report.
ACM SIGKDD Explorations,
Volume 3, Issue 2, Janurary 2002, 47-64. pdf ps
l Shinichi Morishita.
On Classification and Regression.
Proc. of First Int'l Conf. on Discovery Science, Lecture Notes in Artificial
Intelligence, Springer, Vol. 1532, pages 40-57, December 1998.
l Takeshi
Fukuda, Yasuhiko Morimoto, Shinichi Morishita,
and Takeshi Tokuyama.
Mining Optimized Association Rules for Numeric Attributes.
Journal of Computer and System Sciences - Special issue on the 15th ACM
SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, Academic
Press. 58(1): 1-12, 1999.
l Shinichi Morishita.
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs.
Journal of Computer and System Sciences - Special Issue on the 12th ACM
SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, Academic
Press, Volume 52, Number 3, pp. 506-521, June 1996
Invited
Talks
l Shinichi Morishita.
Vertebrate Genome Evolution Examined by Comparing the Human and Fish Genomes. International Symposium
Celebrating Dr. David S. Hogness, Recipient of the 23rd International Prize for
Biology. Kyoto, Japan, Nov. 21, 2007
l Shinichi Morishita.
The medaka draft genome: new insights into vertebrate genome evolution
. Origin
of Vertebrates, Tokyo, Japan, March 28th, 2007.
l Shinichi Morishita.
Development of Whole Genome Shotgun Assembler for Sequencing Medaka Genome.
Medaka Genome and Vertebrate Evolution. Tokyo, Japan, March 3-4, 2004.
(Joint work with Masahiro Kasahara, Shin Sasaki, Yukinobu Nagayasu, Tadasu
Shin-i, and Yuji Kohara)
l Jun
Ogasawara and Shinichi Morishita.
Practical Software for Aligning ESTs to Human Genome.
Proc. of the Thirteenth Annual
Symposium on Combinatorial Pattern Matching (CPM2002) Fukuoka, Japan, July
3-5, 2002.
l Shinichi Morishita.
Gene Resource Locator Project.
The 4th International Workshop on Advanced
Genomics, Kyoto, Japan, Nov. 13-14, 2001.
(Joint work with Jun Ogasawara, Toshihiko Honkura, and Tomoyuki Yamada)
l Shinichi Morishita.
Enumerating Alternative Spliced Transcripts for Understanding Complexity of the
Human Genome.
Machine Intelligence 18
Workshop, King's Manor, University of York, 19-21 September 2001.
(Joint work with Jun Ogasawara, Toshihiko Honkura, and Tomoyuki Yamada)
l Shinichi Morishita.
Bridging a gap between DNA sequences & expression patterns of genes.
International Symposium on
Bioinformatics, Pohang University of Science and Technology, Pohang, Korea,
Nov. 22-23, 2000.
(Joint work with Jun Ogasawara)
l Shinichi Morishita.
Association Rules, Boosting, and Genome Mining.
DIMACS/IBM Workshop
on Data Mining in the Internet Age, IBM - Almaden, San Jose, California,
May 1 - 2, 2000.
(Joint work with Jun Sese)
l Shinichi Morishita.
On Classification and Regression.
Proc. of First Int'l Conf. on Discovery Science, Lecture Notes in Artificial
Intelligence, Springer, Vol. 1532, pages 40-57, December 1998.
PC members serving for international meetings
List of Survey
Papers in Japanese
Professional
Activities in Japanese
Patents
CV for Shinichi Morishita: English version, Japanese version