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教授 森下　真一
助教 市川　和樹
特任講師 鈴木　裕太
特任助教 鈴木　慶彦
技術員 大和　知永
小林　悠
大西　佳代子
博士課程 太田　力文　(D3)
中林　亮　　(D3)
孫　博遠　　(D3)
岩瀬　祐樹　(D2)
修士課程 相野　貴大 (M2)
川原　理樹 (M2)
伊藤　洸規 (M1)
嶋澤　慶     (M1)
細川　寛晃 (M1)
松井　宏睦 (M1)
学部4年生 伊藤　想也 (B4)
太田垣　匠 (B4)

Lab Alumni

Previous master / bachelor students

  • [2022] Bansho Masutani (doctor) Yang Hu (master) Hiroki Ito, Kei Shimazawa (bachelor)
  • [2021] Yuuki Iwase (master) Takahiro Aino, Riki Kawahara (bachelor)
  • [2020] Yusuke Takahashi (doctor) Rikifumi Ota, Ryo Nakabayashi, Boyuan Sun (master) Takeshi Asano, Shotaro Tadachi (bachelor)
  • [2019] Yoshihiko Suzuki (doctor) Toshiaki Uno  (master)
  • [2018] Yuichi Motai (doctor) Ryo Nakabayashi, Rikifumi Ota (bachelor)
  • [2017] Kazuki Ichikawa, Yuta Suzuki (doctor) Yusuke Takahashi (master) Toshiaki Uno, Bansho Masutani (bachelor)
  • [2016] Yoshihiko Suzuki, Shingo Tomioka, Cho Wang (master) Daichi Inanaga (bachelor)
  • [2015] Yuichi Motai (master) Yusuke Takahashi, Yosuke Tanigawa (bachelor)
  • [2014] Yuta Suzuki (master) Yoshihiko Suzuki, Shingo Tomioka (bachelor)
  • [2013] Kazuki Ichikawa, Shoichiro Oishi, Hayato Sakata (master) Yotaro Katayama, Yuichi Motai (bachelor)
  • [2012] Yuta Suzuki, Satoshi Hiraoka (bachelor)
  • [2011] Reginaldo Kuroshu, Hiroshi Hatsuda, Hongyan Wu (doctor) Kazuki Ichikawa, Shoichiro Oishi, Hayato Sakata, Tetsuya Negoro (bachelor)
  • [2010] Xuan Liu, Masaki Munenaga (master)
  • [2009] Masahiro Kasahara, Wei Qu (doctor) Atsushi Sasaki, Akio Hirota, Tetsuro Miyawaki, Xin Li (master)
  • [2008] Tomoyuki Yamada (doctor) Reginaldo Kuroshu, Takashi Shigeta (master)
    [2007] Taro Saito, Yoichiro Nakatani (doctor)
  • [2006] Wei Qu (master)
  • [2005] Jun Sese (doctor) Shin Sasaki, Yuninobu Nagayasu, Eri Nakamura, Budrul Ahsan (master)
  • [2004] Masahiro Kasahara, Miwaka Ohtani, Taro Saito (master)
  • [2003] Jun Ogasawara, Junji Hashimoto, Tomoyuki Yamada (master)
    Shin Sasaki, Eri Nakamura (bachelor)
  • [2002] Norikazu Monma (master) Masahiro Kasahara, Miwaka Ohtani, Taro Saito (bachelor)
  • [2001] Jun Sese (master) Jun Ogasawara, Hisashi Hayashi (bachelor)

List of Doctral Theses

  • [2011] Reginaldo Kuroshu. Computational approaches for high-throughput sequencing and assembly of clone sequences.
    • Kuroshu RM, Watanabe J, Sugano S, Morishita S, Suzuki Y, Kasahara M. Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly. PLoS One.  7;5(5):e10517 (2010)
  • [2011] Hiroshi Hatsuda. Marked Point Process to Analyze Biological Data.
    • Hiroshi Hatsuda, Keigo Muramatsu, Toshiro Aigaki, and Shinichi Morishita. Robust and Accurate Recognition of Veins in Fruit Fly Wings. IEEE 6th International Symposium on Image and Signal Processing and Analysis.pp. 146-151(2009)
  • [2011] Hongyan Wu. Accelerating Path-free XML Queries in RDBMS.
    • Hongyan Wu, Taro L Saito, Shinichi Morishita. Accelerating Path-free XML Queries in RDBMS. IPSJ Online Transactions. Vol. 3, pp.206-217 (2010)
  • [2009] Masahiro Kasahara. RAMEN: Genome Assembler.
    • Masahiro Kasahara(*), Kiyoshi Naruse(*), Shin Sasaki(*), Yoichiro Nakatani(*), Wei Qu, Budrul Ahsan, Tomoyuki Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai, Tomoko Jindo, Daisuke Kobayashi, Atsuko Shimada, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda(#), Shinichi Morishita(#), and Yuji Kohara(#).The medaka draft genome and insights into vertebrate genome evolution. Nature 447, 714-719 (2007)* joint first authors. # joint corresponding authors. doi:10.1038/nature05846
  • [2009] Wei Qu. Efficient frequency-based de novo short read clustering for error trimming in next-generation sequencing.
  • [2008] Shin Sasaki. Medaka genome sequencing and synchronization between genome evolution and nucleosome structure in medaka genome.
  • [2008] Tomoyuki Yamada. Research on searching for unique and repetitive regions from large-scale biological sequence information.
  • [2007] Taro Saito. Purifying XML Structures.
    • Taro L. Saito and Shinichi Morishita. Relational-Style XML Query. Proceedings of the 2008 ACM SIGMOD International Conference on Management of Data (ACM SIGMOD), Vancouver, 303-314 (2008)
  • [2007] Yoichiro Nakatani. Whole genome duplication and reconstruction of ancestor genomes.
  • [2005] Jun Sese. Classified Clustering for Quantitative Biological Data Analysis.
  • [2000] Akihiro Nakaya. Parallel data mining for analysis of correlated genetic factors.
    • Akihiro Nakaya, Harutsugu Hishigaki and Shinichi Morishita. Mining the Quantitative Trait Loci Associated with Oral Glucose Tolerance in the Oletf Rat. Proc. of Pacific Symposium on Biocomputing, pages 367-379, January 4-9, 2000.
    • Akihiro Nakaya, Hideharu Furukawa and Shinichi Morishita. Weighted Majority Decision among Several Region Rules for Scientific Discovery. Proc. of Second Int’l Conf. on Discovery Science, Lecture Notes in Artificial Intelligence, Springer, pages 15-29, December 1999.